Quick Start Guide:)

Install:)

conda install -c conda-forge -c bioconda ganon

Download and Build a database:)

• NCBI RefSeq Bacterial reference genomes

ganon build --db-prefix bac_rs_rg --source refseq --organism-group bacteria --reference-genomes --threads 24

Classify and generate a tax. profile:)

• Download test reads

ganon classify --db-prefix bac_rs_rg --output-prefix classify_results --single-reads H01_1M_0.1.fq.gz --threads 24

• classify_results.tre -> taxonomic profile

---